Here is a list of all documented files with brief descriptions:

[detail level 12]

▼ src
decays.cpp
decays.h	Code calculates decay modes and prints out an SLHA format file with them in. For R-parity conserving NMSSM/MSSM. See arXiv:1703.09717
def.cpp
def.h	Switches (options) and parameters such as default fermion masses, required accuracy etc
dilogwrap.h	Dilog function
flavoursoft.cpp
flavoursoft.h	Header file for RP conserving MSSM object including all (real) soft SUSY breaking parameters and (real) SUSY couplings. with non-trivial flavour calculation
higher_order.h	Interface to higher loop corrections
linalg.cpp
linalg.h	DoubleVector and DoubleMatrix classes of doubles and operations between them, complexified copies also
lowe.cpp
lowe.h	QedQcd object contains Standard Model quark and lepton masses. It integrates them using 3 loop qcd x 1 loop qed effective theory
main-nmssm.cpp	Main C++ program to calculate Higgs masses as a function of tan beta in the NMSSM
main.h	Main C++ program to calculate Higgs masses as a function of tan beta
mainDecay.h	Main C++ program to calculate Higgs masses as a function of tan beta
mssm_twoloop_as.cpp
mssm_twoloop_as.h	Two loop corrections to the top mass. This file has been generated at Fri 14 Jul 2017 22:12:37 with the script "as2_to_cpp.m"
mssm_twoloop_mb.cpp
mssm_twoloop_mb.h	Two loop corrections to the bottom mass. This file has been generated at Fri 7 Apr 2017 21:00:53 with the script "bquark_to_cpp.m". It is part of FlexibleSUSY.
mssm_twoloop_mt.cpp
mssm_twoloop_mt.h	Two loop corrections to the top mass. This file has been generated at Fri 31 Mar 2017 14:09:29 with the script "tquark_to_cpp.m". This file is part of FlexibleSUSY
mssm_twoloop_mtau.h	Two loop corrections to the tau mass. This file has been generated at Fri 7 Apr 2017 21:00:53 with the script "tau_to_cpp.m". It is part of FlexibleSUSY.
mssmjacobian.cpp	Implementation of routines for calculating Jacobian fine-tuning
mssmjacobian.h	Provides routines for calculating Jacobian fine-tuning
mssmUtils.h	A few handy routines for the MSSM: SUSY breaking conditions etc
mycomplex.h	Complex numbers and operators between them
nmssm2loop.h	Two-loop Higgs and potential corrections from Pietro Slavich
nmssmjacobian.cpp	Implementation of routines for calculating Jacobian fine-tuning
nmssmjacobian.h	Provides routines for calculating Jacobian fine-tuning
nmssmsoftpars.cpp
nmssmsoftpars.h	Soft SUSY breaking parameters for NMSSM
nmssmsoftsusy.cpp
nmssmsoftsusy.h	NmssmSoftsusy object contains all the NMSSM functionality: SUSY breaking and preserving parameters, and physical parameters etc
nmssmsusy.cpp
nmssmsusy.h	NmssmSusy NMSSM SUSY couplings and tan beta. NmssmSusy contains all NMSSM SUSY couplings and tan beta, as well as their beta functions
nmssmUtils.h	A few handy routines for the NMSSM: SUSY breaking conditions etc
numerics.cpp
numerics.h	Numerical routines - differential equation solver, differentiator and function minimiser for instance
particle.h	Definitions of particles and container for decay widths
physpars.cpp
physpars.h	Flags for potential problems in sProblem structure, and structure for containing physical MSSM parameters such as pole masses in sPhysical
rge.cpp
rge.h	RGE objects consisting of energy scale and parameters and loops (order in perturbation theory) and thresholds (accuracy of calculation, handles decoupling ususally)
rpvmain.h	Example main program for the RPV aspects
rpvneut.cpp
rpvneut.h	Generalisation of RpvMssmSoftsusy object to include the loop corrections to neutrino masses and to the one-loop sneutrino VEVs
rpvsoft.h	R-Parity violating MSSM object including real params/masses. Use RpvNeutrino for lepton-number violation (includes one-loop neutrino mass corrections), or RpvSoftsusy for baryon number violation
rpvsusypars.cpp
rpvsusypars.h	Contains all supersymmetric RPVMSSM parameters
softpars.cpp
softpars.h	Soft SUSY breaking parameters
softpoint.cpp
softpoint.h	Main program: reads input in SLHA or command line format
softsusy.cpp
softsusy.h	Header file for RP conserving MSSM object including all (real) soft SUSY breaking parameters and (real) SUSY couplings. Also contains MssmSoftsusy2 object, which has alternative EWSB boundary conditions at MSUSY
susy.cpp
susy.h	MssmSusy contains all SUSY couplings and tan beta, as well as their beta functions
tensor.cpp
tensor.h	Three-index tensor for containing information on R-parity violating couplings. Also contains linear algebra functions for interaction with matrices and vectors
threeBodyDecays.cpp
threeBodyDecays.h	Code calculates three-body decay modes and prints out an SLHA format file with them in. For R-parity conserving NMSSM/MSSM. See arXiv://1703.09717
twoBodyDecays.cpp
twoBodyDecays.h	Code calculates two body decay modes of sparticles and Higgs. See arxiv:1703.09717
twoloophiggs.h	Contains two-loop routines from Slavich et al
utils.cpp
utils.h	A few handy bits and pieces - little mathematical functions and the like
xpr-base.h	Symbolic under-object for vectors/matrices for speed upgrade. The linear algebra operations are often set up at compile time rather than at run-time
xpr-matrix.h	Symbolic object for matrices for speed upgrade
xpr-vector.h	Symbolic object for vectors for speed upgrade